Oryza meridionalis vs Oryza brachyantha Synteny results

The syntenic regions between Oryza meridionalis (Oryza meridionalis, Oryza_meridionalis_v1.3) and Oryza brachyantha (Oryza brachyantha, Oryza_brachyantha.v1.4b) were extracted from their pairwise alignment in Ensembl Plants release 100. We look for stretches where the alignment blocks are in synteny. The search is run in two phases. In the first one, syntenic alignments that are closer than 200 kbp are grouped. In the second phase, the groups that are in synteny are linked provided that no more than 2 non-syntenic groups are found between them and they are less than 3Mbp apart.

Configuration parameters

No configuration parameters are available.

Statistics over 80 synteny blocks

Genome coverage (bp) Coding exon coverage (bp)
Oryza meridionalis

Uncovered: 8,382,187 out of 335,668,232
Covered: 327,286,045 out of 335,668,232

Uncovered: 655,807 out of 35,224,824
Covered: 34,569,017 out of 35,224,824

Oryza brachyantha

Uncovered: 16,169,011 out of 260,838,168
Covered: 244,669,157 out of 260,838,168

Uncovered: 1,609,324 out of 33,473,466
Covered: 31,864,142 out of 33,473,466