In this section

Oryza meridionalis vs Oryza sativa Japonica Group Synteny results

The syntenic regions between Oryza meridionalis (Oryza meridionalis, Oryza_meridionalis_v1.3) and Oryza sativa Japonica Group (Oryza sativa Japonica Group, IRGSP-1.0) were extracted from their pairwise alignment in Ensembl Plants release 100. We look for stretches where the alignment blocks are in synteny. The search is run in two phases. In the first one, syntenic alignments that are closer than 200 kbp are grouped. In the second phase, the groups that are in synteny are linked provided that no more than 2 non-syntenic groups are found between them and they are less than 3Mbp apart.

Configuration parameters

No configuration parameters are available.

Statistics over 81 synteny blocks

Genome coverage (bp) Coding exon coverage (bp)
Oryza meridionalis

Uncovered: 3,769,974 out of 335,668,232
Covered: 331,898,258 out of 335,668,232

Uncovered: 252,007 out of 35,224,824
Covered: 34,972,817 out of 35,224,824
Oryza sativa Japonica Group

Uncovered: 10,165,708 out of 375,049,285
Covered: 364,883,577 out of 375,049,285

Uncovered: 907,600 out of 34,424,450
Covered: 33,516,850 out of 34,424,450