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Triticum dicoccoides vs Triticum turgidum Synteny results

The syntenic regions between Triticum dicoccoides (Triticum dicoccoides, WEWSeq_v.1.0) and Triticum turgidum (Triticum turgidum subsp. durum, Svevo.v1) were extracted from their pairwise alignment in Ensembl Plants release 100. We look for stretches where the alignment blocks are in synteny. The search is run in two phases. In the first one, syntenic alignments that are closer than 200 kbp are grouped. In the second phase, the groups that are in synteny are linked provided that no more than 2 non-syntenic groups are found between them and they are less than 3Mbp apart.

Configuration parameters

No configuration parameters are available.

Statistics over 805 synteny blocks

Genome coverage (bp) Coding exon coverage (bp)
Triticum dicoccoides

Uncovered: 1,077,112,786 out of 10,079,039,394
Covered: 9,001,926,608 out of 10,079,039,394

Uncovered: 10,111,022 out of 81,268,905
Covered: 71,157,883 out of 81,268,905
Triticum turgidum

Uncovered: 1,492,365,815 out of 10,463,058,104
Covered: 8,970,692,289 out of 10,463,058,104

Uncovered: 13,532,143 out of 88,577,667
Covered: 75,045,524 out of 88,577,667