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Triticum turgidum vs Aegilops tauschii Synteny results

The syntenic regions between Triticum turgidum (Triticum turgidum subsp. durum, Svevo.v1) and Aegilops tauschii (Aegilops tauschii subsp. strangulata, Aet_v4.0) were extracted from their pairwise alignment in Ensembl Plants release 100. We look for stretches where the alignment blocks are in synteny. The search is run in two phases. In the first one, syntenic alignments that are closer than 200 kbp are grouped. In the second phase, the groups that are in synteny are linked provided that no more than 2 non-syntenic groups are found between them and they are less than 3Mbp apart.

Configuration parameters

No configuration parameters are available.

Statistics over 1,196 synteny blocks

Genome coverage (bp) Coding exon coverage (bp)
Triticum turgidum

Uncovered: 7,556,643,995 out of 10,463,058,104
Covered: 2,906,414,109 out of 10,463,058,104

Uncovered: 49,783,882 out of 88,577,667
Covered: 38,793,785 out of 88,577,667
Aegilops tauschii

Uncovered: 2,290,864,910 out of 4,224,915,394
Covered: 1,934,050,484 out of 4,224,915,394

Uncovered: 18,795,043 out of 53,210,770
Covered: 34,415,727 out of 53,210,770