In this section

Coffea canephora vs Solanum lycopersicum Synteny results

The syntenic regions between Coffea canephora (Coffea canephora str. DH200-94, AUK_PRJEB4211_v1) and Solanum lycopersicum (Solanum lycopersicum, SL3.0) were extracted from their pairwise alignment in Ensembl Plants release 98. We look for stretches where the alignment blocks are in synteny. The search is run in two phases. In the first one, syntenic alignments that are closer than 200 kbp are grouped. In the second phase, the groups that are in synteny are linked provided that no more than 2 non-syntenic groups are found between them and they are less than 3Mbp apart.

Configuration parameters

No configuration parameters are available.

Statistics over 46 synteny blocks

Genome coverage (bp) Coding exon coverage (bp)
Coffea canephora

Uncovered: 528,566,694 out of 568,611,505
Covered: 40,044,811 out of 568,611,505

Uncovered: 25,319,405 out of 30,830,841
Covered: 5,511,436 out of 30,830,841
Solanum lycopersicum

Uncovered: 792,113,355 out of 827,747,456
Covered: 35,634,101 out of 827,747,456

Uncovered: 31,426,669 out of 36,416,191
Covered: 4,989,522 out of 36,416,191