In this section

Capsicum annuum vs Solanum lycopersicum Synteny results

The syntenic regions between Capsicum annuum (Capsicum annuum, ASM51225v2) and Solanum lycopersicum (Solanum lycopersicum, SL3.0) were extracted from their pairwise alignment in Ensembl Plants release 98. We look for stretches where the alignment blocks are in synteny. The search is run in two phases. In the first one, syntenic alignments that are closer than 200 kbp are grouped. In the second phase, the groups that are in synteny are linked provided that no more than 2 non-syntenic groups are found between them and they are less than 3Mbp apart.

Configuration parameters

No configuration parameters are available.

Statistics over 131 synteny blocks

Genome coverage (bp) Coding exon coverage (bp)
Capsicum annuum

Uncovered: 2,857,205,298 out of 3,063,864,880
Covered: 206,659,582 out of 3,063,864,880

Uncovered: 27,805,113 out of 39,113,865
Covered: 11,308,752 out of 39,113,865
Solanum lycopersicum

Uncovered: 760,773,480 out of 827,747,456
Covered: 66,973,976 out of 827,747,456

Uncovered: 26,320,914 out of 36,416,191
Covered: 10,095,277 out of 36,416,191