In this section

Oryza sativa Japonica Group vs Panicum hallii HAL2 Synteny results

The syntenic regions between Oryza sativa Japonica Group (Oryza sativa Japonica Group, IRGSP-1.0) and Panicum hallii HAL2 (Panicum hallii var. hallii str. HAL2, PhalliiHAL_v2.1) were extracted from their pairwise alignment in Ensembl Plants release 96. We look for stretches where the alignment blocks are in synteny. The search is run in two phases. In the first one, syntenic alignments that are closer than 200 kbp are grouped. In the second phase, the groups that are in synteny are linked provided that no more than 2 non-syntenic groups are found between them and they are less than 3Mbp apart.

Configuration parameters

No configuration parameters are available.

Statistics over 45 synteny blocks

Genome coverage (bp) Coding exon coverage (bp)
Oryza sativa Japonica Group

Uncovered: 101,541,692 out of 375,049,285
Covered: 273,507,593 out of 375,049,285

Uncovered: 4,917,729 out of 34,424,450
Covered: 29,506,721 out of 34,424,450
Panicum hallii HAL2

Uncovered: 263,024,378 out of 487,473,734
Covered: 224,449,356 out of 487,473,734

Uncovered: 4,493,663 out of 37,739,336
Covered: 33,245,673 out of 37,739,336