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Solanum lycopersicum vs Solanum tuberosum Synteny results

The syntenic regions between Solanum lycopersicum (Solanum lycopersicum, SL3.0) and Solanum tuberosum (Solanum tuberosum, SolTub_3.0) were extracted from their pairwise alignment in Ensembl Plants release 95. We look for stretches where the alignment blocks are in synteny. The search is run in two phases. In the first one, syntenic alignments that are closer than 200 kbp are grouped. In the second phase, the groups that are in synteny are linked provided that no more than 2 non-syntenic groups are found between them and they are less than 3Mbp apart.

Configuration parameters

No configuration parameters are available.

Statistics over 117 synteny blocks

Genome coverage (bp) Coding exon coverage (bp)
Solanum lycopersicum

Uncovered: 547,132,080 out of 827,747,456
Covered: 280,615,376 out of 827,747,456

Uncovered: 7,280,194 out of 36,416,191
Covered: 29,135,997 out of 36,416,191
Solanum tuberosum

Uncovered: 451,540,174 out of 810,654,046
Covered: 359,113,872 out of 810,654,046

Uncovered: 8,924,022 out of 36,745,425
Covered: 27,821,403 out of 36,745,425