In this section

Oryza punctata vs Oryza rufipogon Synteny results

The syntenic regions between Oryza punctata (Oryza punctata, Oryza_punctata_v1.2) and Oryza rufipogon (Oryza rufipogon, OR_W1943) were extracted from their pairwise alignment in Ensembl Plants release 94. We look for stretches where the alignment blocks are in synteny. The search is run in two phases. In the first one, syntenic alignments that are closer than 200 kbp are grouped. In the second phase, the groups that are in synteny are linked provided that no more than 2 non-syntenic groups are found between them and they are less than 3Mbp apart.

Configuration parameters

No configuration parameters are available.

Statistics over 30 synteny blocks

Genome coverage (bp) Coding exon coverage (bp)
Oryza punctata

Uncovered: 3,405,784 out of 393,816,603
Covered: 390,410,819 out of 393,816,603

Uncovered: 173,646 out of 39,315,246
Covered: 39,141,600 out of 39,315,246
Oryza rufipogon

Uncovered: 3,507,799 out of 338,040,714
Covered: 334,532,915 out of 338,040,714

Uncovered: 245,307 out of 42,763,723
Covered: 42,518,416 out of 42,763,723