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Oryza nivara vs Oryza rufipogon Synteny results

The syntenic regions between Oryza nivara (Oryza sativa f. spontanea, Oryza_nivara_v1.0) and Oryza rufipogon (Oryza rufipogon, OR_W1943) were extracted from their pairwise alignment in Ensembl Plants release 94. We look for stretches where the alignment blocks are in synteny. The search is run in two phases. In the first one, syntenic alignments that are closer than 200 kbp are grouped. In the second phase, the groups that are in synteny are linked provided that no more than 2 non-syntenic groups are found between them and they are less than 3Mbp apart.

Configuration parameters

No configuration parameters are available.

Statistics over 182 synteny blocks

Genome coverage (bp) Coding exon coverage (bp)
Oryza nivara

Uncovered: 9,693,361 out of 337,950,324
Covered: 328,256,963 out of 337,950,324

Uncovered: 838,395 out of 42,562,444
Covered: 41,724,049 out of 42,562,444
Oryza rufipogon

Uncovered: 8,409,048 out of 338,040,714
Covered: 329,631,666 out of 338,040,714

Uncovered: 761,772 out of 42,763,723
Covered: 42,001,951 out of 42,763,723