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Oryza glumipatula vs Oryza rufipogon Synteny results

The syntenic regions between Oryza glumipatula (Oryza glumipatula, Oryza_glumaepatula_v1.5) and Oryza rufipogon (Oryza rufipogon, OR_W1943) were extracted from their pairwise alignment in Ensembl Plants release 94. We look for stretches where the alignment blocks are in synteny. The search is run in two phases. In the first one, syntenic alignments that are closer than 200 kbp are grouped. In the second phase, the groups that are in synteny are linked provided that no more than 2 non-syntenic groups are found between them and they are less than 3Mbp apart.

Configuration parameters

No configuration parameters are available.

Statistics over 60 synteny blocks

Genome coverage (bp) Coding exon coverage (bp)
Oryza glumipatula

Uncovered: 1,639,757 out of 372,860,283
Covered: 371,220,526 out of 372,860,283

Uncovered: 64,870 out of 41,246,944
Covered: 41,182,074 out of 41,246,944
Oryza rufipogon

Uncovered: 1,080,324 out of 338,040,714
Covered: 336,960,390 out of 338,040,714

Uncovered: 27,647 out of 42,763,723
Covered: 42,736,076 out of 42,763,723