In this section

Oryza barthii vs Oryza rufipogon Synteny results

The syntenic regions between Oryza barthii (Oryza barthii, O.barthii_v1) and Oryza rufipogon (Oryza rufipogon, OR_W1943) were extracted from their pairwise alignment in Ensembl Plants release 94. We look for stretches where the alignment blocks are in synteny. The search is run in two phases. In the first one, syntenic alignments that are closer than 200 kbp are grouped. In the second phase, the groups that are in synteny are linked provided that no more than 2 non-syntenic groups are found between them and they are less than 3Mbp apart.

Configuration parameters

No configuration parameters are available.

Statistics over 21 synteny blocks

Genome coverage (bp) Coding exon coverage (bp)
Oryza barthii

Uncovered: 398,560 out of 308,272,304
Covered: 307,873,744 out of 308,272,304

Uncovered: 17,429 out of 39,538,509
Covered: 39,521,080 out of 39,538,509
Oryza rufipogon

Uncovered: 619,196 out of 338,040,714
Covered: 337,421,518 out of 338,040,714

Uncovered: 25,441 out of 42,763,723
Covered: 42,738,282 out of 42,763,723