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Oryza glaberrima vs Oryza rufipogon Synteny results

The syntenic regions between Oryza glaberrima (Oryza glaberrima, Oryza_glaberrima_V1) and Oryza rufipogon (Oryza rufipogon, OR_W1943) were extracted from their pairwise alignment in Ensembl Plants release 94. We look for stretches where the alignment blocks are in synteny. The search is run in two phases. In the first one, syntenic alignments that are closer than 200 kbp are grouped. In the second phase, the groups that are in synteny are linked provided that no more than 2 non-syntenic groups are found between them and they are less than 3Mbp apart.

Configuration parameters

No configuration parameters are available.

Statistics over 30 synteny blocks

Genome coverage (bp) Coding exon coverage (bp)
Oryza glaberrima

Uncovered: 34,005,013 out of 316,419,574
Covered: 282,414,561 out of 316,419,574

Uncovered: 3,315,529 out of 36,293,721
Covered: 32,978,192 out of 36,293,721
Oryza rufipogon

Uncovered: 3,806,347 out of 338,040,714
Covered: 334,234,367 out of 338,040,714

Uncovered: 396,873 out of 42,763,723
Covered: 42,366,850 out of 42,763,723