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Oryza sativa Indica Group vs Oryza punctata Synteny results

The syntenic regions between Oryza sativa Indica Group (Oryza sativa Indica Group, ASM465v1) and Oryza punctata (Oryza punctata, Oryza_punctata_v1.2) were extracted from their pairwise alignment in Ensembl Plants release 75. We look for stretches where the alignment blocks are in synteny. The search is run in two phases. In the first one, syntenic alignments that are closer than 200 kbp are grouped. In the second phase, the groups that are in synteny are linked provided that no more than 2 non-syntenic groups are found between them and they are less than 3Mbp apart.

Configuration parameters

No configuration parameters are available.

Statistics over 155 synteny blocks

Genome coverage (bp) Coding exon coverage (bp)
Oryza sativa Indica Group

Uncovered: 55,649,660 out of 427,004,890
Covered: 371,355,230 out of 427,004,890

Uncovered: 3,127,589 out of 45,465,969
Covered: 42,338,380 out of 45,465,969
Oryza punctata

Uncovered: 4,589,655 out of 393,816,603
Covered: 389,226,948 out of 393,816,603

Uncovered: 302,838 out of 39,315,246
Covered: 39,012,408 out of 39,315,246