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Oryza sativa Indica Group vs Oryza nivara Synteny results

The syntenic regions between Oryza sativa Indica Group (Oryza sativa Indica Group, ASM465v1) and Oryza nivara (Oryza sativa f. spontanea, Oryza_nivara_v1.0) were extracted from their pairwise alignment in Ensembl Plants release 75. We look for stretches where the alignment blocks are in synteny. The search is run in two phases. In the first one, syntenic alignments that are closer than 200 kbp are grouped. In the second phase, the groups that are in synteny are linked provided that no more than 2 non-syntenic groups are found between them and they are less than 3Mbp apart.

Configuration parameters

No configuration parameters are available.

Statistics over 541 synteny blocks

Genome coverage (bp) Coding exon coverage (bp)
Oryza sativa Indica Group

Uncovered: 69,150,552 out of 427,004,890
Covered: 357,854,338 out of 427,004,890

Uncovered: 3,756,945 out of 45,465,969
Covered: 41,709,024 out of 45,465,969
Oryza nivara

Uncovered: 18,069,644 out of 337,950,324
Covered: 319,880,680 out of 337,950,324

Uncovered: 980,112 out of 42,562,444
Covered: 41,582,332 out of 42,562,444