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Oryza barthii vs Oryza sativa Indica Group Synteny results

The syntenic regions between Oryza barthii (Oryza barthii, O.barthii_v1) and Oryza sativa Indica Group (Oryza sativa Indica Group, ASM465v1) were extracted from their pairwise alignment in Ensembl Plants release 75. We look for stretches where the alignment blocks are in synteny. The search is run in two phases. In the first one, syntenic alignments that are closer than 200 kbp are grouped. In the second phase, the groups that are in synteny are linked provided that no more than 2 non-syntenic groups are found between them and they are less than 3Mbp apart.

Configuration parameters

No configuration parameters are available.

Statistics over 22 synteny blocks

Genome coverage (bp) Coding exon coverage (bp)
Oryza barthii

Uncovered: 12,311,459 out of 308,272,304
Covered: 295,960,845 out of 308,272,304

Uncovered: 1,358,691 out of 39,538,509
Covered: 38,179,818 out of 39,538,509
Oryza sativa Indica Group

Uncovered: 67,307,699 out of 427,004,890
Covered: 359,697,191 out of 427,004,890

Uncovered: 4,215,058 out of 45,465,969
Covered: 41,250,911 out of 45,465,969