Oryza glaberrima vs Oryza nivara Synteny results

The syntenic regions between Oryza glaberrima (Oryza glaberrima, Oryza_glaberrima_V1) and Oryza nivara (Oryza sativa f. spontanea, Oryza_nivara_v1.0) were extracted from their pairwise alignment in Ensembl Plants release 75. We look for stretches where the alignment blocks are in synteny. The search is run in two phases. In the first one, syntenic alignments that are closer than 200 kbp are grouped. In the second phase, the groups that are in synteny are linked provided that no more than 2 non-syntenic groups are found between them and they are less than 3Mbp apart.

Configuration parameters

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Statistics over 433 synteny blocks