Oryza glaberrima vs Oryza glumipatula Synteny results

The syntenic regions between Oryza glaberrima (Oryza glaberrima, Oryza_glaberrima_V1) and Oryza glumipatula (Oryza glumipatula, Oryza_glumaepatula_v1.5) were extracted from their pairwise alignment in Ensembl Plants release 75. We look for stretches where the alignment blocks are in synteny. The search is run in two phases. In the first one, syntenic alignments that are closer than 200 kbp are grouped. In the second phase, the groups that are in synteny are linked provided that no more than 2 non-syntenic groups are found between them and they are less than 3Mbp apart.

Configuration parameters

No configuration parameters are available.

Statistics over 111 synteny blocks

Genome coverage (bp) Coding exon coverage (bp)
Oryza glaberrima

Uncovered: 34,086,788 out of 316,419,574
Covered: 282,332,786 out of 316,419,574

Uncovered: 3,293,819 out of 36,293,721
Covered: 32,999,902 out of 36,293,721

Oryza glumipatula

Uncovered: 4,444,452 out of 372,860,283
Covered: 368,415,831 out of 372,860,283

Uncovered: 357,904 out of 41,246,944
Covered: 40,889,040 out of 41,246,944