In this section

Oryza barthii vs Oryza sativa Japonica Group Synteny results

The syntenic regions between Oryza barthii (Oryza barthii, O.barthii_v1) and Oryza sativa Japonica Group (Oryza sativa Japonica Group, IRGSP-1.0) were extracted from their pairwise alignment in Ensembl Plants release 75. We look for stretches where the alignment blocks are in synteny. The search is run in two phases. In the first one, syntenic alignments that are closer than 200 kbp are grouped. In the second phase, the groups that are in synteny are linked provided that no more than 2 non-syntenic groups are found between them and they are less than 3Mbp apart.

Configuration parameters

No configuration parameters are available.

Statistics over 47 synteny blocks

Genome coverage (bp) Coding exon coverage (bp)
Oryza barthii

Uncovered: 470,297 out of 308,272,304
Covered: 307,802,007 out of 308,272,304

Uncovered: 16,565 out of 39,538,509
Covered: 39,521,944 out of 39,538,509
Oryza sativa Japonica Group

Uncovered: 2,771,449 out of 375,049,285
Covered: 372,277,836 out of 375,049,285

Uncovered: 89,811 out of 34,424,450
Covered: 34,334,639 out of 34,424,450