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Oryza glumipatula vs Oryza sativa Japonica Group Synteny results

The syntenic regions between Oryza glumipatula (Oryza glumipatula, Oryza_glumaepatula_v1.5) and Oryza sativa Japonica Group (Oryza sativa Japonica Group, IRGSP-1.0) were extracted from their pairwise alignment in Ensembl Plants release 75. We look for stretches where the alignment blocks are in synteny. The search is run in two phases. In the first one, syntenic alignments that are closer than 200 kbp are grouped. In the second phase, the groups that are in synteny are linked provided that no more than 2 non-syntenic groups are found between them and they are less than 3Mbp apart.

Configuration parameters

No configuration parameters are available.

Statistics over 112 synteny blocks

Genome coverage (bp) Coding exon coverage (bp)
Oryza glumipatula

Uncovered: 2,731,306 out of 372,860,283
Covered: 370,128,977 out of 372,860,283

Uncovered: 62,870 out of 41,246,944
Covered: 41,184,074 out of 41,246,944
Oryza sativa Japonica Group

Uncovered: 4,298,378 out of 375,049,285
Covered: 370,750,907 out of 375,049,285

Uncovered: 110,056 out of 34,424,450
Covered: 34,314,394 out of 34,424,450