In this section

Oryza punctata vs Oryza sativa Japonica Group Synteny results

The syntenic regions between Oryza punctata (Oryza punctata, Oryza_punctata_v1.2) and Oryza sativa Japonica Group (Oryza sativa Japonica Group, IRGSP-1.0) were extracted from their pairwise alignment in Ensembl Plants release 75. We look for stretches where the alignment blocks are in synteny. The search is run in two phases. In the first one, syntenic alignments that are closer than 200 kbp are grouped. In the second phase, the groups that are in synteny are linked provided that no more than 2 non-syntenic groups are found between them and they are less than 3Mbp apart.

Configuration parameters

No configuration parameters are available.

Statistics over 121 synteny blocks

Genome coverage (bp) Coding exon coverage (bp)
Oryza punctata

Uncovered: 1,181,220 out of 393,816,603
Covered: 392,635,383 out of 393,816,603

Uncovered: 84,746 out of 39,315,246
Covered: 39,230,500 out of 39,315,246
Oryza sativa Japonica Group

Uncovered: 3,271,201 out of 375,049,285
Covered: 371,778,084 out of 375,049,285

Uncovered: 97,970 out of 34,424,450
Covered: 34,326,480 out of 34,424,450