Oryza glumipatula vs Oryza punctata Synteny results

The syntenic regions between Oryza glumipatula (Oryza glumipatula, Oryza_glumaepatula_v1.5) and Oryza punctata (Oryza punctata, Oryza_punctata_v1.2) were extracted from their pairwise alignment in Ensembl Plants release 75. We look for stretches where the alignment blocks are in synteny. The search is run in two phases. In the first one, syntenic alignments that are closer than 200 kbp are grouped. In the second phase, the groups that are in synteny are linked provided that no more than 2 non-syntenic groups are found between them and they are less than 3Mbp apart.

Configuration parameters

No configuration parameters are available.

Statistics over 165 synteny blocks

Genome coverage (bp) Coding exon coverage (bp)
Oryza glumipatula

Uncovered: 4,161,944 out of 372,860,283
Covered: 368,698,339 out of 372,860,283

Uncovered: 124,396 out of 41,246,944
Covered: 41,122,548 out of 41,246,944

Oryza punctata

Uncovered: 2,550,698 out of 393,816,603
Covered: 391,265,905 out of 393,816,603

Uncovered: 106,813 out of 39,315,246
Covered: 39,208,433 out of 39,315,246