In this section

Oryza brachyantha vs Oryza sativa Japonica Group Synteny results

The syntenic regions between Oryza brachyantha (Oryza brachyantha, Oryza_brachyantha.v1.4b) and Oryza sativa Japonica Group (Oryza sativa Japonica Group, IRGSP-1.0) were extracted from their pairwise alignment in Ensembl Plants release 73. We look for stretches where the alignment blocks are in synteny. The search is run in two phases. In the first one, syntenic alignments that are closer than 200 kbp are grouped. In the second phase, the groups that are in synteny are linked provided that no more than 2 non-syntenic groups are found between them and they are less than 3Mbp apart.

Configuration parameters

No configuration parameters are available.

Statistics over 118 synteny blocks

Genome coverage (bp) Coding exon coverage (bp)
Oryza brachyantha

Uncovered: 9,728,741 out of 260,838,168
Covered: 251,109,427 out of 260,838,168

Uncovered: 545,637 out of 33,473,466
Covered: 32,927,829 out of 33,473,466
Oryza sativa Japonica Group

Uncovered: 3,037,019 out of 375,049,285
Covered: 372,012,266 out of 375,049,285

Uncovered: 109,151 out of 34,424,450
Covered: 34,315,299 out of 34,424,450