In this section

Oryza glaberrima vs Oryza sativa Japonica Group Synteny results

The syntenic regions between Oryza glaberrima (Oryza glaberrima, Oryza_glaberrima_V1) and Oryza sativa Japonica Group (Oryza sativa Japonica Group, IRGSP-1.0) were extracted from their pairwise alignment in Ensembl Plants release 73. We look for stretches where the alignment blocks are in synteny. The search is run in two phases. In the first one, syntenic alignments that are closer than 200 kbp are grouped. In the second phase, the groups that are in synteny are linked provided that no more than 2 non-syntenic groups are found between them and they are less than 3Mbp apart.

Configuration parameters

No configuration parameters are available.

Statistics over 124 synteny blocks

Genome coverage (bp) Coding exon coverage (bp)
Oryza glaberrima

Uncovered: 25,163,909 out of 316,419,574
Covered: 291,255,665 out of 316,419,574

Uncovered: 1,915,324 out of 36,293,721
Covered: 34,378,397 out of 36,293,721
Oryza sativa Japonica Group

Uncovered: 7,516,987 out of 375,049,285
Covered: 367,532,298 out of 375,049,285

Uncovered: 634,007 out of 34,424,450
Covered: 33,790,443 out of 34,424,450