In this section

Arabidopsis thaliana vs Oryza sativa Japonica Group Synteny results

The syntenic regions between Arabidopsis thaliana (Arabidopsis thaliana, TAIR10) and Oryza sativa Japonica Group (Oryza sativa Japonica Group, IRGSP-1.0) were extracted from their pairwise alignment in Ensembl Plants release 73. We look for stretches where the alignment blocks are in synteny. The search is run in two phases. In the first one, syntenic alignments that are closer than 200 kbp are grouped. In the second phase, the groups that are in synteny are linked provided that no more than 2 non-syntenic groups are found between them and they are less than 3Mbp apart.

Configuration parameters

No configuration parameters are available.

Statistics over 295 synteny blocks

Genome coverage (bp) Coding exon coverage (bp)
Arabidopsis thaliana

Uncovered: 113,678,401 out of 119,667,750
Covered: 5,989,349 out of 119,667,750

Uncovered: 31,866,578 out of 33,774,176
Covered: 1,907,598 out of 33,774,176
Oryza sativa Japonica Group

Uncovered: 354,056,969 out of 375,049,285
Covered: 20,992,316 out of 375,049,285

Uncovered: 32,295,519 out of 34,424,450
Covered: 2,128,931 out of 34,424,450