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Oryza glaberrima vs Oryza sativa Indica Group Synteny results

The syntenic regions between Oryza glaberrima (Oryza glaberrima, Oryza_glaberrima_V1) and Oryza sativa Indica Group (Oryza sativa Indica Group, ASM465v1) were extracted from their pairwise alignment in Ensembl Plants release 66. We look for stretches where the alignment blocks are in synteny. The search is run in two phases. In the first one, syntenic alignments that are closer than 200 kbp are grouped. In the second phase, the groups that are in synteny are linked provided that no more than 2 non-syntenic groups are found between them and they are less than 3Mbp apart.

Configuration parameters

No configuration parameters are available.

Statistics over 112 synteny blocks

Genome coverage (bp) Coding exon coverage (bp)
Oryza glaberrima

Uncovered: 35,313,547 out of 316,419,574
Covered: 281,106,027 out of 316,419,574

Uncovered: 3,431,059 out of 36,293,721
Covered: 32,862,662 out of 36,293,721
Oryza sativa Indica Group

Uncovered: 56,494,226 out of 427,004,890
Covered: 370,510,664 out of 427,004,890

Uncovered: 3,340,390 out of 45,465,969
Covered: 42,125,579 out of 45,465,969