In this section

8 rice EPO

This alignment has been generated in Ensembl Plants release 47 and is composed of 22,470 blocks (up to 401,429 bp long).

API access

This alignment set can be accessed using the Compara API via the Bio::EnsEMBL::DBSQL::MethodLinkSpeciesSetAdaptor using the method_link_type "EPO" and the species_set_name "rice".

SpeciesAssemblyGenome length (bp)Genome coverage (bp)Genome coverage (%)Coding exon length (bp)Coding exon coverage (bp)Coding exon coverage (%)
Oryza sativa Japonica GroupIRGSP-1.0375,049,285298,618,58579.6234,424,45029,041,28884.36
Oryza nivara (Oryza sativa f. spontanea)Oryza_nivara_v1.0337,950,324219,210,36864.8642,562,44430,906,40772.61
Oryza sativa Indica GroupASM465v1427,004,890246,100,50357.6345,465,96930,406,40366.88
Oryza rufipogonOR_W1943338,040,714266,128,35278.7342,763,72335,080,64182.03
Oryza glumipatulaOryza_glumaepatula_v1.5372,860,283224,844,57060.3041,246,94427,921,20267.69
Oryza glaberrimaOryza_glaberrima_V1316,419,574230,304,59572.7836,293,72128,004,16977.16
Oryza barthiiO.barthii_v1308,272,304236,911,27476.8539,538,50931,385,28179.38
Oryza meridionalisOryza_meridionalis_v1.3335,668,232122,158,87136.3935,224,82415,007,30742.60

Block size distribution

Size range All 22,470 alignment blocks
# blocks Total size (incl. gaps)
10 bp - 100 bp
16
1.1 kb
100 bp - 1 kb
780
407.8 kb
1 kb - 10 kb
15,736
82.8 Mb
10 kb - 100 kb
25,700
876.3 Mb
100 kb - 1 Mb
2,708
433.0 Mb