In this section

15 wheat_component_D Cactus

This alignment has been generated in Ensembl Plants release 61 and is composed of 468,690 blocks (up to 244,735 bp long).

API access

This alignment set can be accessed using the Compara API via the Bio::EnsEMBL::DBSQL::MethodLinkSpeciesSetAdaptor using the method_link_type "CACTUS_DB" and the species_set_name "collection-wheat_component_D".

SpeciesAssemblyGenome length (bp)Genome coverage (bp)Genome coverage (%)Coding exon length (bp)Coding exon coverage (bp)Coding exon coverage (%)
Triticum aestivumIWGSC14,547,261,5653,508,068,93124.11133,674,96632,330,15324.19
Triticum aestivum Landmark (Triticum aestivum)PGSBv2.114,433,190,7833,283,718,78622.75174,056,59538,318,01722.01
Triticum aestivum Stanley (Triticum aestivum)PGSBv2.214,463,524,0363,191,233,75522.06174,633,32937,604,07521.53
Triticum aestivum Arinalrfor (Triticum aestivum)PGSBv2.114,645,464,1073,150,308,97421.51179,602,84638,033,25621.18
Triticum aestivum Mace (Triticum aestivum)PGSBv2.114,350,847,9063,181,266,93022.17175,341,77538,205,22621.79
Triticum aestivum Julius (Triticum aestivum)PGSBv2.114,385,030,2263,134,953,63821.79176,371,41037,939,00521.51
Triticum aestivum Sy Mattis (Triticum aestivum)PGSBv2.114,884,612,1263,115,795,67020.93175,482,12638,084,09221.70
Triticum aestivum Lancer (Triticum aestivum)PGSBv2.114,281,318,4193,233,241,99422.64175,166,21838,364,83321.90
Triticum aestivum Jagger (Triticum aestivum)PGSBv2.114,538,313,8983,222,907,15022.17174,238,85737,597,76521.58
Triticum aestivum Norin61 (Triticum aestivum)PGSBv2.114,910,390,5983,317,615,16622.25180,930,93938,892,40121.50
Aegilops tauschii (Aegilops tauschii subsp. strangulata)Aet_v4.04,224,915,3942,951,015,03569.8553,210,77036,074,75567.80
Triticum urartuIGDB4,851,895,022254,704,0275.2541,813,63823,247,73355.60
Secale cerealeRye_Lo7_2018_v1p1p16,735,227,109210,054,6843.1244,182,62325,518,92057.76
Hordeum vulgare (Hordeum vulgare subsp. vulgare)MorexV3_pseudomolecules_assembly4,225,577,519142,207,1453.3742,301,35625,486,23460.25
Brachypodium distachyonBrachypodium_distachyon_v3.0271,163,41979,673,51729.3839,007,31725,994,00666.64

Block size distribution

Size range All 468,690 alignment blocks
# blocks Total size (incl. gaps)
10 bp - 100 bp
33,992
1.6 Mb
100 bp - 1 kb
96,052
46.3 Mb
1 kb - 10 kb
235,416
928.3 Mb
10 kb - 100 kb
101,739
2.7 Gb
100 kb - 1 Mb
1,491
185.8 Mb