In this section

Medicago truncatula vs Sphenostylis stenocarpa Synteny results

The syntenic regions between Medicago truncatula (Medicago truncatula, MtrunA17r5.0_ANR) and Sphenostylis stenocarpa (Sphenostylis stenocarpa, hybrid_with_Hi_C) were extracted from their pairwise alignment in Ensembl Plants release 114. We look for stretches where the alignment blocks are in synteny. The search is run in two phases. In the first one, syntenic alignments that are closer than 200 kbp are grouped. In the second phase, the groups that are in synteny are linked provided that no more than 2 non-syntenic groups are found between them and they are less than 3Mbp apart.

Configuration parameters

No configuration parameters are available.

Statistics over 96 synteny blocks

Genome coverage (bp) Coding exon coverage (bp)
Medicago truncatula

Uncovered: 187,495,197 out of 429,196,467
Covered: 241,701,270 out of 429,196,467

Uncovered: 14,885,134 out of 45,081,035
Covered: 30,195,901 out of 45,081,035
Sphenostylis stenocarpa

Uncovered: 414,210,129 out of 649,801,261
Covered: 235,591,132 out of 649,801,261

Uncovered: 10,340,093 out of 34,594,766
Covered: 24,254,673 out of 34,594,766