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Triticum aestivum vs Hordeum vulgare Synteny results

The syntenic regions between Triticum aestivum (Triticum aestivum, IWGSC) and Hordeum vulgare (Hordeum vulgare subsp. vulgare, MorexV3_pseudomolecules_assembly) were extracted from their pairwise alignment in Ensembl Plants release 106. We look for stretches where the alignment blocks are in synteny. The search is run in two phases. In the first one, syntenic alignments that are closer than 200 kbp are grouped. In the second phase, the groups that are in synteny are linked provided that no more than 2 non-syntenic groups are found between them and they are less than 3Mbp apart.

Configuration parameters

No configuration parameters are available.

Statistics over 1,138 synteny blocks

Genome coverage (bp) Coding exon coverage (bp)
Triticum aestivum

Uncovered: 11,993,681,325 out of 14,547,261,565
Covered: 2,553,580,240 out of 14,547,261,565

Uncovered: 92,216,929 out of 133,674,966
Covered: 41,458,037 out of 133,674,966
Hordeum vulgare

Uncovered: 2,982,087,412 out of 4,225,577,519
Covered: 1,243,490,107 out of 4,225,577,519

Uncovered: 19,013,315 out of 42,301,356
Covered: 23,288,041 out of 42,301,356