Oryza barthii vs Oryza nivara Synteny results

The syntenic regions between Oryza barthii (Oryza barthii, O.barthii_v1) and Oryza nivara (Oryza sativa f. spontanea, Oryza_nivara_v1.0) were extracted from their pairwise alignment in Ensembl Plants release 75. We look for stretches where the alignment blocks are in synteny. The search is run in two phases. In the first one, syntenic alignments that are closer than 200 kbp are grouped. In the second phase, the groups that are in synteny are linked provided that no more than 2 non-syntenic groups are found between them and they are less than 3Mbp apart.

Configuration parameters

No configuration parameters are available.

Statistics over 476 synteny blocks

Genome coverage (bp) Coding exon coverage (bp)
Oryza barthii

Uncovered: 9,363,129 out of 308,272,304
Covered: 298,909,175 out of 308,272,304

Uncovered: 559,487 out of 39,538,509
Covered: 38,979,022 out of 39,538,509

Oryza nivara

Uncovered: 13,518,547 out of 337,950,324
Covered: 324,431,777 out of 337,950,324

Uncovered: 779,732 out of 42,562,444
Covered: 41,782,712 out of 42,562,444