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Oryza sativa Japonica Group vs Cyanidioschyzon merolae LastZ results

Oryza sativa Japonica Group (Oryza sativa Japonica Group, IRGSP-1.0) and Cyanidioschyzon merolae (Cyanidioschyzon merolae strain 10D, ASM9120v1) were aligned using the LastZ alignment algorithm (LastZ) in Ensembl Plants release 73. Oryza sativa Japonica Group was used as the reference species. After running LastZ, the raw LastZ alignment blocks were chained according to their location in both genomes. During the final netting process, the best sub-chain was chosen in each region on the reference species.

Configuration parameters

No configuration parameters are available.

Statistics over 6,318 alignment blocks

Genome coverage (bp) Coding exon coverage (bp)
Oryza sativa Japonica Group

Uncovered: 373,521,574 out of 375,049,285
Covered: 1,527,711 out of 375,049,285

Uncovered: 33,648,279 out of 34,818,902
Matches: 735,326 out of 34,818,902
Mismatches: 408,741 out of 34,818,902
Insertions: 26,556 out of 34,818,902
Identity over aligned base-pairs: 62.8%

Cyanidioschyzon merolae

Uncovered: 16,054,314 out of 16,728,945
Covered: 674,631 out of 16,728,945

Uncovered: 6,808,444 out of 7,459,550
Matches: 405,238 out of 7,459,550
Mismatches: 229,714 out of 7,459,550
Insertions: 16,154 out of 7,459,550
Identity over aligned base-pairs: 62.2%

Block size distribution

Size range All 6,318 alignment blocks Blocks grouped in nets
# blocks Total size (incl. gaps) # nets Total size (incl. gaps)
1 bp - 10 bp
7
49.0 bp
10 bp - 100 bp
1,575
115.6 kb
301
21.6 kb
100 bp - 1 kb
4,550
1.2 Mb
2,090
862.6 kb
1 kb - 10 kb
186
261.4 kb
440
677.0 kb