Oryza sativa Japonica Group vs Setaria viridis Synteny results

The syntenic regions between Oryza sativa Japonica Group (Oryza sativa Japonica Group, IRGSP-1.0) and Setaria viridis (Setaria viridis, Setaria_viridis_v2.0) were extracted from their pairwise alignment in Ensembl Plants release 101. We look for stretches where the alignment blocks are in synteny. The search is run in two phases. In the first one, syntenic alignments that are closer than 200 kbp are grouped. In the second phase, the groups that are in synteny are linked provided that no more than 2 non-syntenic groups are found between them and they are less than 3Mbp apart.

Configuration parameters

No configuration parameters are available.

Statistics over 52 synteny blocks

Genome coverage (bp) Coding exon coverage (bp)
Oryza sativa Japonica Group

Uncovered: 163,106,517 out of 375,049,285
Covered: 211,942,768 out of 375,049,285

Uncovered: 10,810,137 out of 34,424,450
Covered: 23,614,313 out of 34,424,450

Setaria viridis

Uncovered: 177,393,241 out of 395,731,502
Covered: 218,338,261 out of 395,731,502

Uncovered: 12,453,718 out of 41,880,594
Covered: 29,426,876 out of 41,880,594