Oryza sativa Japonica Group vs Setaria viridis Synteny results
The syntenic regions between Oryza sativa Japonica Group (Oryza sativa Japonica Group, IRGSP-1.0) and Setaria viridis (Setaria viridis, Setaria_viridis_v2.0) were extracted from their pairwise alignment in Ensembl Plants release 101. We look for stretches where the alignment blocks are in synteny. The search is run in two phases. In the first one, syntenic alignments that are closer than 200 kbp are grouped. In the second phase, the groups that are in synteny are linked provided that no more than 2 non-syntenic groups are found between them and they are less than 3Mbp apart.
No configuration parameters are available.
Statistics over 52 synteny blocks
|Genome coverage (bp)||Coding exon coverage (bp)|
|Oryza sativa Japonica Group||
Uncovered: 163,106,517 out of 375,049,285
Uncovered: 10,810,137 out of 34,424,450
Uncovered: 177,393,241 out of 395,731,502
Uncovered: 12,453,718 out of 41,880,594