Oryza meridionalis vs Oryza nivara Synteny results

The syntenic regions between Oryza meridionalis (Oryza meridionalis, Oryza_meridionalis_v1.3) and Oryza nivara (Oryza sativa f. spontanea, Oryza_nivara_v1.0) were extracted from their pairwise alignment in Ensembl Plants release 100. We look for stretches where the alignment blocks are in synteny. The search is run in two phases. In the first one, syntenic alignments that are closer than 200 kbp are grouped. In the second phase, the groups that are in synteny are linked provided that no more than 2 non-syntenic groups are found between them and they are less than 3Mbp apart.

Configuration parameters

No configuration parameters are available.

Statistics over 211 synteny blocks

Genome coverage (bp) Coding exon coverage (bp)
Oryza meridionalis

Uncovered: 19,673,241 out of 335,668,232
Covered: 315,994,991 out of 335,668,232

Uncovered: 1,545,360 out of 35,224,824
Covered: 33,679,464 out of 35,224,824

Oryza nivara

Uncovered: 19,948,356 out of 337,950,324
Covered: 318,001,968 out of 337,950,324

Uncovered: 2,345,108 out of 42,562,444
Covered: 40,217,336 out of 42,562,444