Oryza meridionalis vs Oryza barthii Synteny results

The syntenic regions between Oryza meridionalis (Oryza meridionalis, Oryza_meridionalis_v1.3) and Oryza barthii (Oryza barthii, O.barthii_v1) were extracted from their pairwise alignment in Ensembl Plants release 100. We look for stretches where the alignment blocks are in synteny. The search is run in two phases. In the first one, syntenic alignments that are closer than 200 kbp are grouped. In the second phase, the groups that are in synteny are linked provided that no more than 2 non-syntenic groups are found between them and they are less than 3Mbp apart.

Configuration parameters

No configuration parameters are available.

Statistics over 90 synteny blocks

Genome coverage (bp) Coding exon coverage (bp)
Oryza meridionalis

Uncovered: 4,846,304 out of 335,668,232
Covered: 330,821,928 out of 335,668,232

Uncovered: 348,473 out of 35,224,824
Covered: 34,876,351 out of 35,224,824

Oryza barthii

Uncovered: 7,180,970 out of 308,272,304
Covered: 301,091,334 out of 308,272,304

Uncovered: 1,012,469 out of 39,538,509
Covered: 38,526,040 out of 39,538,509