Oryza sativa Japonica Group vs Eragrostis curvula Synteny results

The syntenic regions between Oryza sativa Japonica Group (Oryza sativa Japonica Group, IRGSP-1.0) and Eragrostis curvula (Eragrostis curvula, CERZOS_E.curvula1.0) were extracted from their pairwise alignment in Ensembl Plants release 100. We look for stretches where the alignment blocks are in synteny. The search is run in two phases. In the first one, syntenic alignments that are closer than 200 kbp are grouped. In the second phase, the groups that are in synteny are linked provided that no more than 2 non-syntenic groups are found between them and they are less than 3Mbp apart.

Configuration parameters

No configuration parameters are available.

Statistics over 42 synteny blocks

Genome coverage (bp) Coding exon coverage (bp)
Oryza sativa Japonica Group

Uncovered: 309,859,826 out of 375,049,285
Covered: 65,189,459 out of 375,049,285

Uncovered: 26,838,130 out of 34,424,450
Covered: 7,586,320 out of 34,424,450

Eragrostis curvula

Uncovered: 523,466,423 out of 603,072,269
Covered: 79,605,846 out of 603,072,269

Uncovered: 52,229,070 out of 62,628,176
Covered: 10,399,106 out of 62,628,176