Coffea canephora vs Vitis vinifera Synteny results
The syntenic regions between Coffea canephora (Coffea canephora str. DH200-94, AUK_PRJEB4211_v1) and Vitis vinifera (Vitis vinifera, 12X) were extracted from their pairwise alignment in Ensembl Plants release 98. We look for stretches where the alignment blocks are in synteny. The search is run in two phases. In the first one, syntenic alignments that are closer than 200 kbp are grouped. In the second phase, the groups that are in synteny are linked provided that no more than 2 non-syntenic groups are found between them and they are less than 3Mbp apart.
No configuration parameters are available.
Statistics over 40 synteny blocks
|Genome coverage (bp)||Coding exon coverage (bp)|
Uncovered: 543,996,487 out of 568,611,505
Uncovered: 27,456,979 out of 30,830,841
Uncovered: 455,559,193 out of 486,265,422
Uncovered: 28,968,562 out of 32,794,161