Coffea canephora vs Vitis vinifera Synteny results

The syntenic regions between Coffea canephora (Coffea canephora str. DH200-94, AUK_PRJEB4211_v1) and Vitis vinifera (Vitis vinifera, 12X) were extracted from their pairwise alignment in Ensembl Plants release 98. We look for stretches where the alignment blocks are in synteny. The search is run in two phases. In the first one, syntenic alignments that are closer than 200 kbp are grouped. In the second phase, the groups that are in synteny are linked provided that no more than 2 non-syntenic groups are found between them and they are less than 3Mbp apart.

Configuration parameters

No configuration parameters are available.

Statistics over 40 synteny blocks

Genome coverage (bp) Coding exon coverage (bp)
Coffea canephora

Uncovered: 543,996,487 out of 568,611,505
Covered: 24,615,018 out of 568,611,505

Uncovered: 27,456,979 out of 30,830,841
Covered: 3,373,862 out of 30,830,841

Vitis vinifera

Uncovered: 455,559,193 out of 486,265,422
Covered: 30,706,229 out of 486,265,422

Uncovered: 28,968,562 out of 32,794,161
Covered: 3,825,599 out of 32,794,161