Actinidia chinensis vs Solanum lycopersicum Synteny results

The syntenic regions between Actinidia chinensis (Actinidia chinensis var. chinensis, Red5_PS1_1.69.0) and Solanum lycopersicum (Solanum lycopersicum, SL3.0) were extracted from their pairwise alignment in Ensembl Plants release 96. We look for stretches where the alignment blocks are in synteny. The search is run in two phases. In the first one, syntenic alignments that are closer than 200 kbp are grouped. In the second phase, the groups that are in synteny are linked provided that no more than 2 non-syntenic groups are found between them and they are less than 3Mbp apart.

Configuration parameters

No configuration parameters are available.

Statistics over 94 synteny blocks

Genome coverage (bp) Coding exon coverage (bp)
Actinidia chinensis

Uncovered: 495,418,877 out of 553,842,477
Covered: 58,423,600 out of 553,842,477

Uncovered: 36,126,313 out of 42,227,027
Covered: 6,100,714 out of 42,227,027

Solanum lycopersicum

Uncovered: 772,065,825 out of 827,747,456
Covered: 55,681,631 out of 827,747,456

Uncovered: 27,760,102 out of 36,416,191
Covered: 8,656,089 out of 36,416,191