Aegilops tauschii vs Triticum aestivum Synteny results

The syntenic regions between Aegilops tauschii (Aegilops tauschii subsp. strangulata, Aet_v4.0) and Triticum aestivum (Triticum aestivum, IWGSC) were extracted from their pairwise alignment in Ensembl Plants release 95. We look for stretches where the alignment blocks are in synteny. The search is run in two phases. In the first one, syntenic alignments that are closer than 200 kbp are grouped. In the second phase, the groups that are in synteny are linked provided that no more than 2 non-syntenic groups are found between them and they are less than 3Mbp apart.

Configuration parameters

No configuration parameters are available.

Statistics over 1,292 synteny blocks

Genome coverage (bp) Coding exon coverage (bp)
Aegilops tauschii

Uncovered: 215,603,438 out of 4,224,915,394
Covered: 4,009,311,956 out of 4,224,915,394

Uncovered: 595,743 out of 53,210,770
Covered: 52,615,027 out of 53,210,770

Triticum aestivum

Uncovered: 4,264,980,623 out of 14,547,261,565
Covered: 10,282,280,942 out of 14,547,261,565

Uncovered: 16,796,329 out of 133,674,966
Covered: 116,878,637 out of 133,674,966