Triticum dicoccoides vs Triticum aestivum Synteny results
The syntenic regions between Triticum dicoccoides (Triticum dicoccoides, WEWSeq_v.1.0) and Triticum aestivum (Triticum aestivum, IWGSC) were extracted from their pairwise alignment in Ensembl Plants release 100. We look for stretches where the alignment blocks are in synteny. The search is run in two phases. In the first one, syntenic alignments that are closer than 200 kbp are grouped. In the second phase, the groups that are in synteny are linked provided that no more than 2 non-syntenic groups are found between them and they are less than 3Mbp apart.
No configuration parameters are available.
Statistics over 741 synteny blocks
|Genome coverage (bp)||Coding exon coverage (bp)|
Uncovered: 296,174,661 out of 10,079,039,394
Uncovered: 2,330,979 out of 81,268,905
Uncovered: 4,714,944,492 out of 14,547,261,565
Uncovered: 48,715,835 out of 133,674,966