Triticum dicoccoides vs Triticum aestivum Synteny results

The syntenic regions between Triticum dicoccoides (Triticum dicoccoides, WEWSeq_v.1.0) and Triticum aestivum (Triticum aestivum, IWGSC) were extracted from their pairwise alignment in Ensembl Plants release 100. We look for stretches where the alignment blocks are in synteny. The search is run in two phases. In the first one, syntenic alignments that are closer than 200 kbp are grouped. In the second phase, the groups that are in synteny are linked provided that no more than 2 non-syntenic groups are found between them and they are less than 3Mbp apart.

Configuration parameters

No configuration parameters are available.

Statistics over 741 synteny blocks

Genome coverage (bp) Coding exon coverage (bp)
Triticum dicoccoides

Uncovered: 296,174,661 out of 10,079,039,394
Covered: 9,782,864,733 out of 10,079,039,394

Uncovered: 2,330,979 out of 81,268,905
Covered: 78,937,926 out of 81,268,905

Triticum aestivum

Uncovered: 4,714,944,492 out of 14,547,261,565
Covered: 9,832,317,073 out of 14,547,261,565

Uncovered: 48,715,835 out of 133,674,966
Covered: 84,959,131 out of 133,674,966