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Oryza brachyantha vs Oryza rufipogon Synteny results

The syntenic regions between Oryza brachyantha (Oryza brachyantha, Oryza_brachyantha.v1.4b) and Oryza rufipogon (Oryza rufipogon, OR_W1943) were extracted from their pairwise alignment in Ensembl Plants release 94. We look for stretches where the alignment blocks are in synteny. The search is run in two phases. In the first one, syntenic alignments that are closer than 200 kbp are grouped. In the second phase, the groups that are in synteny are linked provided that no more than 2 non-syntenic groups are found between them and they are less than 3Mbp apart.

Configuration parameters

No configuration parameters are available.

Statistics over 25 synteny blocks

Genome coverage (bp) Coding exon coverage (bp)
Oryza brachyantha

Uncovered: 11,348,734 out of 260,838,168
Covered: 249,489,434 out of 260,838,168

Uncovered: 714,004 out of 33,473,466
Covered: 32,759,462 out of 33,473,466
Oryza rufipogon

Uncovered: 2,263,692 out of 338,040,714
Covered: 335,777,022 out of 338,040,714

Uncovered: 130,779 out of 42,763,723
Covered: 42,632,944 out of 42,763,723