Oryza glaberrima vs Oryza rufipogon Synteny results
The syntenic regions between Oryza glaberrima (Oryza glaberrima, Oryza_glaberrima_V1) and Oryza rufipogon (Oryza rufipogon, OR_W1943) were extracted from their pairwise alignment in Ensembl Plants release 94. We look for stretches where the alignment blocks are in synteny. The search is run in two phases. In the first one, syntenic alignments that are closer than 200 kbp are grouped. In the second phase, the groups that are in synteny are linked provided that no more than 2 non-syntenic groups are found between them and they are less than 3Mbp apart.
No configuration parameters are available.
Statistics over 30 synteny blocks
|Genome coverage (bp)||Coding exon coverage (bp)|
Uncovered: 34,005,013 out of 316,419,574
Uncovered: 3,315,529 out of 36,293,721
Uncovered: 3,806,347 out of 338,040,714
Uncovered: 396,873 out of 42,763,723