Medicago truncatula vs Phaseolus vulgaris Synteny results

The syntenic regions between Medicago truncatula (Medicago truncatula, MedtrA17_4.0) and Phaseolus vulgaris (Phaseolus vulgaris, PhaVulg1_0) were extracted from their pairwise alignment in Ensembl Plants release 94. We look for stretches where the alignment blocks are in synteny. The search is run in two phases. In the first one, syntenic alignments that are closer than 200 kbp are grouped. In the second phase, the groups that are in synteny are linked provided that no more than 2 non-syntenic groups are found between them and they are less than 3Mbp apart.

Configuration parameters

No configuration parameters are available.

Statistics over 77 synteny blocks

Genome coverage (bp) Coding exon coverage (bp)
Medicago truncatula

Uncovered: 257,874,238 out of 412,800,391
Covered: 154,926,153 out of 412,800,391

Uncovered: 29,078,383 out of 50,132,764
Covered: 21,054,381 out of 50,132,764

Phaseolus vulgaris

Uncovered: 358,423,604 out of 521,076,696
Covered: 162,653,092 out of 521,076,696

Uncovered: 17,974,362 out of 34,663,348
Covered: 16,688,986 out of 34,663,348