Oryza sativa Japonica Group vs Setaria italica Synteny results

The syntenic regions between Oryza sativa Japonica Group (Oryza sativa Japonica Group, IRGSP-1.0) and Setaria italica (Setaria italica, Setaria_italica_v2.0) were extracted from their pairwise alignment in Ensembl Plants release 94. We look for stretches where the alignment blocks are in synteny. The search is run in two phases. In the first one, syntenic alignments that are closer than 200 kbp are grouped. In the second phase, the groups that are in synteny are linked provided that no more than 2 non-syntenic groups are found between them and they are less than 3Mbp apart.

Configuration parameters

No configuration parameters are available.

Statistics over 42 synteny blocks

Genome coverage (bp) Coding exon coverage (bp)
Oryza sativa Japonica Group

Uncovered: 168,416,739 out of 375,049,285
Covered: 206,632,546 out of 375,049,285

Uncovered: 11,372,612 out of 34,424,450
Covered: 23,051,838 out of 34,424,450

Setaria italica

Uncovered: 190,197,094 out of 405,732,883
Covered: 215,535,789 out of 405,732,883

Uncovered: 12,351,458 out of 39,583,990
Covered: 27,232,532 out of 39,583,990