Oryza sativa Japonica Group vs Setaria italica Synteny results
The syntenic regions between Oryza sativa Japonica Group (Oryza sativa Japonica Group, IRGSP-1.0) and Setaria italica (Setaria italica, Setaria_italica_v2.0) were extracted from their pairwise alignment in Ensembl Plants release 94. We look for stretches where the alignment blocks are in synteny. The search is run in two phases. In the first one, syntenic alignments that are closer than 200 kbp are grouped. In the second phase, the groups that are in synteny are linked provided that no more than 2 non-syntenic groups are found between them and they are less than 3Mbp apart.
No configuration parameters are available.
Statistics over 42 synteny blocks
|Genome coverage (bp)||Coding exon coverage (bp)|
|Oryza sativa Japonica Group||
Uncovered: 168,416,739 out of 375,049,285
Uncovered: 11,372,612 out of 34,424,450
Uncovered: 190,197,094 out of 405,732,883
Uncovered: 12,351,458 out of 39,583,990