Brachypodium distachyon vs Oryza sativa Japonica Group Synteny results

The syntenic regions between Brachypodium distachyon (Brachypodium distachyon, Brachypodium_distachyon_v3.0) and Oryza sativa Japonica Group (Oryza sativa Japonica Group, IRGSP-1.0) were extracted from their pairwise alignment in Ensembl Plants release 94. We look for stretches where the alignment blocks are in synteny. The search is run in two phases. In the first one, syntenic alignments that are closer than 200 kbp are grouped. In the second phase, the groups that are in synteny are linked provided that no more than 2 non-syntenic groups are found between them and they are less than 3Mbp apart.

Configuration parameters

No configuration parameters are available.

Statistics over 35 synteny blocks

Genome coverage (bp) Coding exon coverage (bp)
Brachypodium distachyon

Uncovered: 51,480,726 out of 271,163,419
Covered: 219,682,693 out of 271,163,419

Uncovered: 5,471,879 out of 39,007,317
Covered: 33,535,438 out of 39,007,317

Oryza sativa Japonica Group

Uncovered: 119,096,921 out of 375,049,285
Covered: 255,952,364 out of 375,049,285

Uncovered: 6,601,066 out of 34,424,450
Covered: 27,823,384 out of 34,424,450