Oryza sativa Japonica Group vs Sorghum bicolor Synteny results

The syntenic regions between Oryza sativa Japonica Group (Oryza sativa Japonica Group, IRGSP-1.0) and Sorghum bicolor (Sorghum bicolor, Sorghum_bicolor_NCBIv3) were extracted from their pairwise alignment in Ensembl Plants release 94. We look for stretches where the alignment blocks are in synteny. The search is run in two phases. In the first one, syntenic alignments that are closer than 200 kbp are grouped. In the second phase, the groups that are in synteny are linked provided that no more than 2 non-syntenic groups are found between them and they are less than 3Mbp apart.

Configuration parameters

No configuration parameters are available.

Statistics over 40 synteny blocks

Genome coverage (bp) Coding exon coverage (bp)
Oryza sativa Japonica Group

Uncovered: 176,045,362 out of 375,049,285
Covered: 199,003,923 out of 375,049,285

Uncovered: 10,951,923 out of 34,424,450
Covered: 23,472,527 out of 34,424,450

Sorghum bicolor

Uncovered: 464,095,008 out of 708,735,318
Covered: 244,640,310 out of 708,735,318

Uncovered: 10,734,318 out of 39,785,927
Covered: 29,051,609 out of 39,785,927