Leersia perrieri vs Oryza sativa Japonica Group Synteny results

The syntenic regions between Leersia perrieri (Leersia perrieri, Lperr_V1.4) and Oryza sativa Japonica Group (Oryza sativa Japonica Group, IRGSP-1.0) were extracted from their pairwise alignment in Ensembl Plants release 94. We look for stretches where the alignment blocks are in synteny. The search is run in two phases. In the first one, syntenic alignments that are closer than 200 kbp are grouped. In the second phase, the groups that are in synteny are linked provided that no more than 2 non-syntenic groups are found between them and they are less than 3Mbp apart.

Configuration parameters

No configuration parameters are available.

Statistics over 35 synteny blocks

Genome coverage (bp) Coding exon coverage (bp)
Leersia perrieri

Uncovered: 3,319,295 out of 266,687,832
Covered: 263,368,537 out of 266,687,832

Uncovered: 308,574 out of 36,898,596
Covered: 36,590,022 out of 36,898,596

Oryza sativa Japonica Group

Uncovered: 8,817,535 out of 375,049,285
Covered: 366,231,750 out of 375,049,285

Uncovered: 290,541 out of 34,424,450
Covered: 34,133,909 out of 34,424,450