Solanum tuberosum vs Vitis vinifera Synteny results
The syntenic regions between Solanum tuberosum (Solanum tuberosum, SolTub_3.0) and Vitis vinifera (Vitis vinifera, 12X) were extracted from their pairwise alignment in Ensembl Plants release 94. We look for stretches where the alignment blocks are in synteny. The search is run in two phases. In the first one, syntenic alignments that are closer than 200 kbp are grouped. In the second phase, the groups that are in synteny are linked provided that no more than 2 non-syntenic groups are found between them and they are less than 3Mbp apart.
No configuration parameters are available.
Statistics over 58 synteny blocks
|Genome coverage (bp)||Coding exon coverage (bp)|
Uncovered: 727,690,083 out of 810,654,046
Uncovered: 27,863,076 out of 36,745,425
Uncovered: 379,041,420 out of 486,265,422
Uncovered: 20,598,363 out of 32,794,161