Solanum tuberosum vs Vitis vinifera Synteny results

The syntenic regions between Solanum tuberosum (Solanum tuberosum, SolTub_3.0) and Vitis vinifera (Vitis vinifera, 12X) were extracted from their pairwise alignment in Ensembl Plants release 94. We look for stretches where the alignment blocks are in synteny. The search is run in two phases. In the first one, syntenic alignments that are closer than 200 kbp are grouped. In the second phase, the groups that are in synteny are linked provided that no more than 2 non-syntenic groups are found between them and they are less than 3Mbp apart.

Configuration parameters

No configuration parameters are available.

Statistics over 58 synteny blocks

Genome coverage (bp) Coding exon coverage (bp)
Solanum tuberosum

Uncovered: 727,690,083 out of 810,654,046
Covered: 82,963,963 out of 810,654,046

Uncovered: 27,863,076 out of 36,745,425
Covered: 8,882,349 out of 36,745,425

Vitis vinifera

Uncovered: 379,041,420 out of 486,265,422
Covered: 107,224,002 out of 486,265,422

Uncovered: 20,598,363 out of 32,794,161
Covered: 12,195,798 out of 32,794,161