Arabidopsis thaliana vs Brassica rapa Synteny results

The syntenic regions between Arabidopsis thaliana (Arabidopsis thaliana, TAIR10) and Brassica rapa (Brassica rapa, Brapa_1.0) were extracted from their pairwise alignment in Ensembl Plants release 94. We look for stretches where the alignment blocks are in synteny. The search is run in two phases. In the first one, syntenic alignments that are closer than 200 kbp are grouped. In the second phase, the groups that are in synteny are linked provided that no more than 2 non-syntenic groups are found between them and they are less than 3Mbp apart.

Configuration parameters

No configuration parameters are available.

Statistics over 59 synteny blocks

Genome coverage (bp) Coding exon coverage (bp)
Arabidopsis thaliana

Uncovered: 24,394,502 out of 119,667,750
Covered: 95,273,248 out of 119,667,750

Uncovered: 2,848,629 out of 33,774,176
Covered: 30,925,547 out of 33,774,176

Brassica rapa

Uncovered: 188,506,982 out of 283,822,783
Covered: 95,315,801 out of 283,822,783

Uncovered: 30,076,660 out of 48,055,850
Covered: 17,979,190 out of 48,055,850