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Oryza glumipatula vs Oryza sativa Indica Group Synteny results

The syntenic regions between Oryza glumipatula (Oryza glumipatula, Oryza_glumaepatula_v1.5) and Oryza sativa Indica Group (Oryza sativa Indica Group, ASM465v1) were extracted from their pairwise alignment in Ensembl Plants release 75. We look for stretches where the alignment blocks are in synteny. The search is run in two phases. In the first one, syntenic alignments that are closer than 200 kbp are grouped. In the second phase, the groups that are in synteny are linked provided that no more than 2 non-syntenic groups are found between them and they are less than 3Mbp apart.

Configuration parameters

No configuration parameters are available.

Statistics over 161 synteny blocks

Genome coverage (bp) Coding exon coverage (bp)
Oryza glumipatula

Uncovered: 7,086,003 out of 372,860,283
Covered: 365,774,280 out of 372,860,283

Uncovered: 354,105 out of 41,246,944
Covered: 40,892,839 out of 41,246,944
Oryza sativa Indica Group

Uncovered: 56,785,556 out of 427,004,890
Covered: 370,219,334 out of 427,004,890

Uncovered: 3,108,346 out of 45,465,969
Covered: 42,357,623 out of 45,465,969